Files in exomeCopy
Copy number variant detection from exome sequencing read depth

DESCRIPTION
NAMESPACE
NEWS
R
R/classes.R R/helper_functions.R R/main_functions.R R/methods.R
build
build/vignette.rds
data
data/exomecounts.rda
inst
inst/doc
inst/doc/exomeCopy.R
inst/doc/exomeCopy.Rnw
inst/doc/exomeCopy.pdf
inst/extdata
inst/extdata/1000Genomes_files.txt
inst/extdata/mapping.bam
inst/extdata/mapping.bam.bai
inst/extdata/mapping.sam
inst/extdata/reference.fa
inst/extdata/reference.fa.fai
inst/extdata/targets.bed
man
man/ExomeCopy-class.Rd man/compileCopyCountSegments.Rd man/copyCountSegments.Rd man/countBamInGRanges.Rd man/exomeCopy-package.Rd man/exomeCopy.Rd man/exomecounts.Rd man/generateBackground.Rd man/getGCcontent.Rd man/negLogLike.Rd man/plot.exomeCopyObject.Rd man/plotCompiledCNV.Rd man/subdivideGRanges.Rd
src
src/exomeCopy.c
vignettes
vignettes/exomeCopy.Rnw
vignettes/exomeCopy.bib
exomeCopy documentation built on May 31, 2017, 11:34 a.m.