Man pages for exomeCopy
Copy number variant detection from exome sequencing read depth
| compileCopyCountSegments | Compile segments across samples |
| copyCountSegments | Segments of identical copy count from exomeCopy |
| countBamInGRanges | Count reads from BAM file in genomic ranges |
| exomeCopy | Fit the exomeCopy or exomeCopyVar model to the observed... |
| ExomeCopy-class | Class "ExomeCopy" |
| exomeCopy-package | Copy number variant detection from exome sequencing read... |
| exomecounts | Sample counts from 16 exome sequencing samples from 1000... |
| generateBackground | Generate median background read depth |
| getGCcontent | Get the GC content of target ranges from a reference FASTA... |
| negLogLike | Generalized negative log likelihood and Viterbi algorithms |
| plotCompiledCNV | Plot compiled CNV segments for one sequence/chromosome |
| plot.exomeCopyObject | Plot function for exomeCopy |
| subdivideGRanges | Subdivide ranges of a GRanges object into nearly equal width... |
