GoogleGenomics: R Client for Google Genomics API

Provides an R package to interact with the Google Genomics API.

Author
Cassie Doll [aut], Nicole Deflaux [aut], Siddhartha Bagaria [aut, cre]
Date of publication
None
Maintainer
Siddhartha Bagaria <sidb@google.com>
License
Apache License (== 2.0) | file LICENSE
Version
1.6.0
URLs

View on Bioconductor

Man pages

authenticate
Configure how to authenticate for Google Genomics API.
getReads
Get reads from Google Genomics.
getReadsPage
Get one page of reads from Google Genomics.
getSearchPage
Get one page of search results for a particular entity type...
getVariants
Get variants from Google Genomics.
getVariantsPage
Get one page of variants from Google Genomics.
GoogleGenomics
A basic R package for Google Genomics API.
readsToGAlignments
Convert reads to GAlignments.
variantsToGRanges
Convert variants to GRanges.
variantsToVRanges
Convert variants to VRanges.

Files in this package

GoogleGenomics/DESCRIPTION
GoogleGenomics/LICENSE
GoogleGenomics/NAMESPACE
GoogleGenomics/NEWS
GoogleGenomics/R
GoogleGenomics/R/GoogleGenomics.R
GoogleGenomics/R/authenticate.R
GoogleGenomics/R/client.R
GoogleGenomics/R/reads.R
GoogleGenomics/R/variants.R
GoogleGenomics/R/zzz.R
GoogleGenomics/build
GoogleGenomics/build/vignette.rds
GoogleGenomics/inst
GoogleGenomics/inst/doc
GoogleGenomics/inst/doc/AnnotatingVariants.R
GoogleGenomics/inst/doc/AnnotatingVariants.Rmd
GoogleGenomics/inst/doc/AnnotatingVariants.html
GoogleGenomics/inst/doc/PlottingAlignments.R
GoogleGenomics/inst/doc/PlottingAlignments.Rmd
GoogleGenomics/inst/doc/PlottingAlignments.html
GoogleGenomics/inst/doc/VariantAnnotation-comparison-test.R
GoogleGenomics/inst/doc/VariantAnnotation-comparison-test.Rmd
GoogleGenomics/inst/doc/VariantAnnotation-comparison-test.html
GoogleGenomics/inst/doc/figure
GoogleGenomics/man
GoogleGenomics/man/GoogleGenomics.Rd
GoogleGenomics/man/authenticate.Rd
GoogleGenomics/man/getReads.Rd
GoogleGenomics/man/getReadsPage.Rd
GoogleGenomics/man/getSearchPage.Rd
GoogleGenomics/man/getVariants.Rd
GoogleGenomics/man/getVariantsPage.Rd
GoogleGenomics/man/readsToGAlignments.Rd
GoogleGenomics/man/variantsToGRanges.Rd
GoogleGenomics/man/variantsToVRanges.Rd
GoogleGenomics/tests
GoogleGenomics/tests/runTests.R
GoogleGenomics/tests/testthat
GoogleGenomics/tests/testthat/test-getReads.R
GoogleGenomics/tests/testthat/test-getVariants.R
GoogleGenomics/vignettes
GoogleGenomics/vignettes/AnnotatingVariants.Rmd
GoogleGenomics/vignettes/PlottingAlignments.Rmd
GoogleGenomics/vignettes/VariantAnnotation-comparison-test.Rmd