UBod/podkat: Position-Dependent Kernel Association Test

This package provides an association test that is capable of dealing with very rare and even private variants. This is accomplished by a kernel-based approach that takes the positions of the variants into account. The test can be used for pre-processed matrix data, but also directly for variant data stored in VCF files. Association testing can be performed whole-genome, whole-exome, or restricted to pre-defined regions of interest. The test is complemented by tools for analyzing and visualizing the results.

Getting started

Package details

AuthorUlrich Bodenhofer
Bioconductor views Annotation DataImport Genetics Sequencing VariantAnnotation WholeGenome
MaintainerUlrich Bodenhofer <[email protected]>
LicenseGPL (>= 2)
Version1.13.0
URL http://www.bioinf.jku.at/software/podkat/ https://github.com/UBod/podkat
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("UBod/podkat")
UBod/podkat documentation built on May 16, 2018, 12:24 a.m.