UBod/podkat: Position-Dependent Kernel Association Test

This package provides an association test that is capable of dealing with very rare and even private variants. This is accomplished by a kernel-based approach that takes the positions of the variants into account. The test can be used for pre-processed matrix data, but also directly for variant data stored in VCF files. Association testing can be performed whole-genome, whole-exome, or restricted to pre-defined regions of interest. The test is complemented by tools for analyzing and visualizing the results.

Getting started

Package details

AuthorUlrich Bodenhofer [aut,cre]
Bioconductor views Annotation DataImport Genetics Sequencing VariantAnnotation WholeGenome
MaintainerUlrich Bodenhofer <ulrich@bodenhofer.com>
LicenseGPL (>= 2)
URL https://github.com/UBod/podkat
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
UBod/podkat documentation built on May 5, 2024, 6:37 a.m.