hgA: Artificial Human Chromosome for Testing Purposes

In UBod/podkat: Position-Dependent Kernel Association Test

Artificial Human Chromosome for Testing Purposes

Description

A GRanges object defining a minimalistic artificial human chromosome with 200,000 bp length

Usage

hgA

Format

Real human genome-based examples would require the supply of massive data and would require lengthy computation times. Therefore, the examples supplied with this package are based on a small single-chromosome artificial genome. The GRanges object hgA provides a description of this artificial genome that can be used for further processing, e.g. by the partitionRegions function.

Author(s)

Ulrich Bodenhofer [e-mail]

References

http://www.bioinf.jku.at/software/podkat

See Also

GRanges, partitionRegions

Examples

## load data set
data(hgA)

## display hgA
show(hgA)
genome(hgA)

## partition hgA into overlapping regions of length 10,000 bp
partitionRegions(hgA, width=10000)

UBod/podkat documentation built on Nov. 17, 2022, 6:45 p.m.