Files in UBod/podkat

Position-Dependent Kernel Association Test

.gitignore

DESCRIPTION

NAMESPACE

R/AllClasses.R R/AllGenerics.R R/access-methods.R R/assocTest-methods.R R/c-methods.R R/coerce-methods.R R/computeKernel.R R/computePvalues.R R/computeWeights.R R/filterResult-methods.R R/genotypeMatrix-methods.R R/inputChecks.R R/nullModel-methods.R R/p.adjust-methods.R R/partitionRegions-methods.R R/plot-methods.R R/print-methods.R R/qqplot-methods.R R/readGenotypeMatrix-methods.R R/readRegionsFromBedFile.R R/readSampleNamesFromVcfHeader.R R/readVariantInfo-methods.R R/resampling.R R/show-methods.R R/sort-methods.R R/split-methods.R R/summary-methods.R R/unmaskedRegions.R R/weightFuncs.R R/weights-methods.R README.md

data/b36Unmasked.RData

data/b37Unmasked.RData

data/hg18Unmasked.RData

data/hg19Unmasked.RData

data/hg38Unmasked.RData

data/hgA.RData

inst/CITATION

inst/COPYRIGHT

inst/NEWS

inst/examples/HBA.bed

inst/examples/example1.vcf.gz

inst/examples/example1.vcf.gz.tbi

inst/examples/example1lin.csv

inst/examples/example1log.csv

man/.Rhistory

man/AssocTestResult-class.Rd man/AssocTestResultRanges-class.Rd man/GenotypeMatrix-class.Rd man/NullModel-class.Rd man/VariantInfo-class.Rd man/assocTest-methods.Rd man/computeKernel.Rd man/filterResult-methods.Rd man/genotypeMatrix-methods.Rd man/hgA.Rd man/nullModel-methods.Rd man/p.adjust-methods.Rd man/partitionRegions-methods.Rd man/plot-methods.Rd man/podkat-package.Rd man/print-methods.Rd man/qqplot-methods.Rd man/readGenotypeMatrix-methods.Rd man/readRegionsFromBedFile.Rd man/readSampleNamesFromVcfHeader.Rd man/readVariantInfo-methods.Rd man/sort-methods.Rd man/split-methods.Rd man/unmasked-datasets.Rd man/unmaskedRegions.Rd man/weightFuncs.Rd man/weights-methods.Rd

src/Makevars

src/R_init_podkat.cpp

src/bernoulliExact.cpp

src/bernoulliExact.h

src/checkAndFixGenotype.cpp

src/checkAndFixGenotype.h

src/cumMax.cpp

src/cumMax.h

src/doubleMale.cpp

src/doubleMale.h

src/errCodes.h

src/kernels.cpp

src/kernels.h

src/pValues.cpp

src/pValues.h

src/partitionRegions.cpp

src/partitionRegions.h

src/qfc.cpp

src/qfc.h

src/readGenotypeMatrix.cpp

src/readGenotypeMatrix.h

src/readVariantInfo.cpp

src/readVariantInfo.h

vignettes/JKU_EN_noName.pdf vignettes/PODKAT_example.pdf vignettes/PODKAT_workflow.pdf vignettes/PosKernel.pdf vignettes/SKAT_example.pdf vignettes/betaWeights.pdf

vignettes/bioinf-article.txi

vignettes/bioinf-bar.png

vignettes/bioinf.cls

vignettes/invSdWeights.pdf vignettes/logisticWeights.pdf

vignettes/podkat.Rnw

UBod/podkat documentation built on Feb. 18, 2024, 2:32 a.m.