jackgisby/packFinder: de novo Annotation of Pack-TYPE Transposable Elements

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

Getting started

Package details

Bioconductor views Annotation Genetics SequenceMatching
Maintainer
LicenseGPL-2
Version0.99.7
URL https://github.com/jackgisby/packFinder
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jackgisby/packFinder")
jackgisby/packFinder documentation built on May 3, 2020, 7:02 p.m.