A dataframe containing genomic ranges and names referring
to sequences to be extracted, likely obtained from
packSearch, can be converted to a GRanges
object. Can be converted back to a dataframe using
getPacksFromGRanges. Additional features,
such as clusters and TSD sequences, will be included in
the object as metadata columns.
A dataframe containing genomic ranges and names
referring to sequences to be extracted. Can be obtained
A GRanges object containing the ranges contained in
packMatches and additional metadata columns. May
be easily converted between dataframe and GRanges format
for use in the
packFinder package and
package. Note that most functions in the
package require sequence ranges to be provided in
data(packMatches) packGRanges <- packsToGRanges(packMatches)
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