API for jackgisby/packFinder
de novo Annotation of Pack-TYPE Transposable Elements

Global functions
alternatePacksToFasta Source code
arabidopsisThalianaRefseq Man page
blastAnalysis Man page Source code
blastAnnotate Man page Source code
checkPermissions Source code
clustTest Source code
collapseSeqs Man page Source code
executeBlast Source code
filterTsdMatches Source code
filterWildcards Man page Source code
getConsensusSeqs Source code
getPackSeqs Man page Source code
getPacksFromCsv Man page Source code
getPacksFromFasta Man page Source code
getPacksFromGRanges Man page Source code
getTsds Man page Source code
identifyPotentialPackElements Man page Source code
identifyTirMatches Man page Source code
initialisePackMatches Source code
makeBlastDb Man page Source code
packAlign Man page Source code
packBlast Man page Source code
packClust Man page Source code
packFinder Man page
packMatches Man page
packSearch Man page Source code
packsToCsv Man page Source code
packsToFasta Man page Source code
packsToGRanges Man page Source code
readBlast Man page Source code
readUc Man page Source code
searchCheck Source code
tirClust Man page Source code
jackgisby/packFinder documentation built on July 19, 2022, 2:25 a.m.