gwascat: representing and modeling data in the EMBL-EBI GWAS catalog

Represent and model data in the EMBL-EBI GWAS catalog.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("gwascat")
AuthorVJ Carey <stvjc@channing.harvard.edu>
Bioconductor views Genetics
Date of publicationNone
MaintainerVJ Carey <stvjc@channing.harvard.edu>
LicenseArtistic-2.0
Version2.6.0

View on Bioconductor

Functions

adj Man page
bindcadd_snv Man page
chklocs Man page
DataFrame Man page
ebicat37 Man page
ebicat38 Man page
efo.obo.g Man page
g17SM Man page
getRsids Man page
getRsids,gwaswloc-method Man page
getTraits Man page
getTraits,gwaswloc-method Man page
gg17N Man page
gw6.rs_17 Man page
gwascat Man page
gwascat-package Man page
gwastagger Man page
[,gwaswloc,ANY,ANY,ANY-method Man page
[,gwaswloc,ANY-method Man page
gwaswloc-class Man page
[,gwaswloc-method Man page
gwcex2gviz Man page
gwdf_2014_09_08 Man page
gwrngs19 Man page
gwrngs38 Man page
impute.snps Man page
ldtagr Man page
locon6 Man page
locs4trait Man page
low17 Man page
makeCurrentGwascat Man page
node2uri Man page
nodeData Man page
nodes Man page
obo2graphNEL Man page
riskyAlleleCount Man page
rules_6.0_1kg_17 Man page
show,gwaswloc-method Man page
si.hs.38 Man page
SnpMatrix-class Man page
subGraph Man page
subsetByChromosome Man page
subsetByChromosome,gwaswloc-method Man page
subsetByTraits Man page
subsetByTraits,gwaswloc-method Man page
topTraits Man page
traitsManh Man page
ugraph Man page
uri2node Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/addSeqlengths.R R/bindcadd_snv.R R/classes.R R/descendants.R R/ebiquery.R R/fixnonasc.R R/funcs.R R/gwcex2gviz.R R/ldtagr.R R/makeConsecChrs.R R/obotools.R R/traitsManh.R R/updater.R R/zzz.R
build
build/vignette.rds
data
data/datalist
data/ebicat37.rda
data/ebicat37UCSC.rda
data/ebicat38.rda
data/efo.obo.g.rda
data/g17SM.rda
data/gg17N.rda
data/gw6.rs_17.rda
data/gwastagger.rda
data/gwdf_2014_09_08.rda
data/gwrngs19.rda
data/gwrngs38.rda
data/locon6.rda
data/low17.rda
data/rules_6.0_1kg_17.rda
data/si.hs.37.rda
data/si.hs.38.rda
inst
inst/csv
inst/csv/nomatch.csv
inst/doc
inst/doc/gwascat.R
inst/doc/gwascat.Rnw
inst/doc/gwascat.pdf
inst/doc/gwascatOnt.R
inst/doc/gwascatOnt.Rmd
inst/doc/gwascatOnt.html
inst/gff3
inst/gff3/chr17_34834101_35834100.gff3
inst/gff3/chr17_43000000_45000000.gff3
inst/obo
inst/obo/HumanDO.obo.gz
inst/obo/efo.020815.obo.gz
inst/obo/hpo.obo.gz
inst/olddata
inst/olddata/gwdf_2012_03_20.rda
inst/olddata/gwdf_2012_09_22.rda
inst/olddata/gwrngs.rda
inst/scripts
inst/scripts/builders.hist.txt
inst/scripts/doebicat38.hist.txt
inst/tab
inst/tab/build0307df.hist.txt
inst/tab/build0307df.hist.txt.gz
inst/tab/gwascatalog20120307.txt.gz
inst/tab/gwascatalog20120320.txt.gz
inst/tab/import_gwtab.R
inst/unitTests
inst/unitTests/test_gwascat.R
man
man/bindcadd_snv.Rd man/gwascat-package.Rd man/gwastagger.Rd man/gwaswloc-class.Rd man/gwcex2gviz.Rd man/gwdf_2012_02_02.Rd man/ldtagr.Rd man/locon6.Rd man/makeCurrentGwascat.Rd man/obo2graphNEL.Rd man/riskyAlleleCount.Rd man/topTraits.Rd man/traitsManh.Rd
tests
tests/test-all.R
vignettes
vignettes/gwascat.Rnw
vignettes/gwascat.bib
vignettes/gwascatOnt.Rmd
vignettes/litman.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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