AGDEX: Agreement of Differential Expression Analysis

A tool to evaluate agreement of differential expression for cross-species genomics

Author
Stan Pounds <stanley.pounds@stjude.org>; Cuilan Lani Gao <cuilan.gao@stjude.org>
Date of publication
None
Maintainer
Cuilan lani Gao <cuilan.gao@stjude.org>
License
GPL Version 2 or later
Version
1.22.0

View on Bioconductor

Man pages

agdex
Agreement of Differential Expression Analysis
AGDEX-package
Agreement of differential expression analysis
agdex.res
Saved result returned by agdex()
agdex.scatterplot
scatter plot of AGDEX result
get.gset.result.details
Extract gene-level details from gene-set results
gset.data
a sample gene-set data
human.data
Sample ExpressionSet object of human data
make.dex.set.object
Make a list object for function agdex()
map.data
Probe-set Mapping Data
mouse.data
Mouse Data
read.agdex.gset.details
read detailed results of gene-set analyses
read.agdex.result
Read the output file of agdex analysis
write.agdex.gset.details
write the output of get.gset.result.details to a...
write.agdex.result
Write the AGDEX results to output file

Files in this package

AGDEX/DESCRIPTION
AGDEX/NAMESPACE
AGDEX/R
AGDEX/R/agdex.R
AGDEX/R/agdex.scatterplot.R
AGDEX/R/all.assign.agdex.R
AGDEX/R/choose.multinomial.R
AGDEX/R/compute.agdex.stat.R
AGDEX/R/compute.gset.agdex.stats.R
AGDEX/R/compute.gset.dstats.R
AGDEX/R/find.probe.col.R
AGDEX/R/get.gset.result.details.R
AGDEX/R/gsc.to.index.list.R
AGDEX/R/make.dex.set.object.r
AGDEX/R/map.gset.lists.R
AGDEX/R/prep.dex.set.R
AGDEX/R/prep.map.data.R
AGDEX/R/read.agdex.gset.details.R
AGDEX/R/read.agdex.gset.list.R
AGDEX/R/read.agdex.result.R
AGDEX/R/read.enrich.gset.list.R
AGDEX/R/read.gset.collection.R
AGDEX/R/write.agdex.gset.details.R
AGDEX/R/write.agdex.result.R
AGDEX/R/write.gset.list.result.R
AGDEX/build
AGDEX/build/vignette.rds
AGDEX/data
AGDEX/data/agdex.res.rda
AGDEX/data/gset.data.rda
AGDEX/data/human.data.rda
AGDEX/data/map.data.rda
AGDEX/data/mouse.data.rda
AGDEX/inst
AGDEX/inst/doc
AGDEX/inst/doc/AGDEX.R
AGDEX/inst/doc/AGDEX.pdf
AGDEX/inst/doc/AGDEX.rnw
AGDEX/man
AGDEX/man/AGDEX-package.Rd
AGDEX/man/agdex.Rd
AGDEX/man/agdex.res.Rd
AGDEX/man/agdex.scatterplot.Rd
AGDEX/man/get.gset.result.details.Rd
AGDEX/man/gset.data.Rd
AGDEX/man/human.data.Rd
AGDEX/man/make.dex.set.object.Rd
AGDEX/man/map.data.Rd
AGDEX/man/mouse.data.Rd
AGDEX/man/read.agdex.gset.details.Rd
AGDEX/man/read.agdex.result.Rd
AGDEX/man/write.agdex.gset.details.Rd
AGDEX/man/write.agdex.result.Rd
AGDEX/vignettes
AGDEX/vignettes/AGDEX.rnw