write.agdex.gset.details: write the output of get.gset.result.details to a...

In AGDEX: Agreement of Differential Expression Analysis

Description

A function to write an output file with detailed AGDEX gene-set result.

Usage

write.agdex.gset.details(gset.details, out.file)

Arguments

gset.details	result produced by get.gset.result.details
out.file	name of the output file

Value

the path and name of output file of the result of gene-level agdex analysis

Author(s)

Stan Pounds <[e-mail]; Cuilan Lani Gao <[e-mail]>

See Also

agdex; get.gset.result.details; read.agdex.gset.details

Examples

# load the saved result run agdex routine 
data(agdex.res)
                  
# obtain all gene-set result
gset.res.all <- get.gset.result.details(agdex.res,gset.ids = NULL, alpha=0.01)

# obtain the gene set result of memember genes
gset.res0 <- get.gset.result.details(agdex.res,gset.ids = "DNA_CATABOLIC_PROCESS", alpha=0.01)

# write the gene set details to an output file
## Not run:  
 write.agdex.gset.details(gset.res0, "gset.details.txt")
 
## End(Not run)

AGDEX documentation built on Nov. 8, 2020, 8:32 p.m.