agdex.scatterplot: scatter plot of AGDEX result

In AGDEX: Agreement of Differential Expression Analysis

Description

A function to visualize the results of AGDEX analysis for the entire genome or specific gene-sets in a scatterplot.

Usage

agdex.scatterplot(agdex.res, gset.id = NULL)

Arguments

agdex.res	result of an AGDEX analysis, the returned result of the function agdex.
gset.id	a specified gene-set identifier. Default is set to NULL, which produces a visualization result of the entire genome.

Value

Returns either a scatter plot of pairs of difference in average log-expression values for genome-wide anlysis or a specified gene-set.

Author(s)

Stan Pounds <[e-mail]; Cuilan Lani Gao <[e-mail]>

See Also

agdex; get.gset.result.details

Examples

data(agdex.res)
# see visualization result of the whole genome
agdex.scatterplot(agdex.res, gset.id=NULL)
# scatterplot for a specified gene-set
agdex.scatterplot(agdex.res, gset.id="DNA_CATABOLIC_PROCESS") 

AGDEX documentation built on Nov. 8, 2020, 8:32 p.m.