manta: Microbial Assemblage Normalized Transcript Analysis

Tools for robust comparative metatranscriptomics.

AuthorGinger Armbrust, Adrian Marchetti
Date of publicationNone
MaintainerChris Berthiaume <chrisbee@uw.edu>, Adrian Marchetti <amarchetti@unc.edu>
LicenseArtistic-2.0
Version1.20.0
http://manta.ocean.washington.edu/

View on Bioconductor

Functions

align2manta Man page
cmdArgsToVariables Man page
collapseRepliCounts Man page
compbiasPlot Man page
compbiasTest Man page
counts2manta Man page
generateWeights Man page
in2manta Man page
makeSampleDF Man page
manta Man page
manta-class Man page
manta.ra Man page
meta2counts Man page
metataxa2subcounts Man page
nf2nr Man page
normfact2absTMM Man page
nr Man page
outGenes Man page
plot.manta Man page
pplacer2manta Man page
readSeastar Man page
seastar2counts Man page
summary.manta Man page
tableMetas Man page
tableMetaSums Man page

Files

manta/DESCRIPTION
manta/LICENSE
manta/NAMESPACE
manta/R
manta/R/Aggregate.R manta/R/Checks.R manta/R/CompBias.R manta/R/Counts.R manta/R/DGE.R manta/R/Manta.R manta/R/Normalize.R manta/R/Outliers.R manta/R/Plot.R manta/R/Pplacer.R manta/R/Samples.R manta/R/Seastar.R manta/R/Summary.R manta/R/Util.R manta/R/Weights.R manta/R/in2manta.R
manta/build
manta/build/vignette.rds
manta/inst
manta/inst/CITATION
manta/inst/NEWS
manta/inst/doc
manta/inst/doc/manta.R
manta/inst/doc/manta.Rnw
manta/inst/doc/manta.pdf
manta/inst/extdata
manta/inst/extdata/PapaGO-BLAST.results-diatoms.Rdata
manta/inst/extdata/PapaGO-BLAST.results-diatoms.tab
manta/inst/extdata/PapaGO-BWA.annot-diatoms.tab
manta/inst/extdata/PapaGO-BWA.counts-diatoms.tab
manta/inst/extdata/Pgranii-ambient.seastar
manta/inst/extdata/Pgranii-plusFe.seastar
manta/inst/extdata/pplacer
manta/inst/extdata/pplacer/KOG0035
manta/inst/extdata/pplacer/KOG0035/taxtable.db
manta/inst/extdata/pplacer/KOG0119
manta/inst/extdata/pplacer/KOG0119/taxtable.db
manta/inst/extdata/pplacer/KOG0521
manta/inst/extdata/pplacer/KOG0521/taxtable.db
manta/inst/script
manta/inst/script/manta.R
manta/man
manta/man/cmdArgsToVariables.Rd manta/man/collapseRepliCounts.Rd manta/man/compbiasPlot.Rd manta/man/compbiasTest.Rd manta/man/generateWeights.Rd manta/man/in2manta.Rd manta/man/makeSampleDF.Rd manta/man/manta-class.Rd manta/man/manta.Rd manta/man/meta2counts.Rd manta/man/metataxa2subcounts.Rd manta/man/nf2nr.Rd manta/man/normfact2absTMM.Rd manta/man/nr.Rd manta/man/outliers.Rd manta/man/plot.manta.Rd manta/man/pplacer2manta.Rd manta/man/readSeastar.Rd manta/man/seastar2counts.Rd manta/man/summary.manta.Rd
manta/vignettes
manta/vignettes/manta.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.