manta: Microbial Assemblage Normalized Transcript Analysis

Tools for robust comparative metatranscriptomics.

AuthorGinger Armbrust, Adrian Marchetti
Date of publicationNone
MaintainerChris Berthiaume <chrisbee@uw.edu>, Adrian Marchetti <amarchetti@unc.edu>
LicenseArtistic-2.0
Version1.20.0
http://manta.ocean.washington.edu/

View on Bioconductor

Files in this package

manta/DESCRIPTION
manta/LICENSE
manta/NAMESPACE
manta/R
manta/R/Aggregate.R manta/R/Checks.R manta/R/CompBias.R manta/R/Counts.R manta/R/DGE.R manta/R/Manta.R manta/R/Normalize.R manta/R/Outliers.R manta/R/Plot.R manta/R/Pplacer.R manta/R/Samples.R manta/R/Seastar.R manta/R/Summary.R manta/R/Util.R manta/R/Weights.R manta/R/in2manta.R
manta/build
manta/build/vignette.rds
manta/inst
manta/inst/CITATION
manta/inst/NEWS
manta/inst/doc
manta/inst/doc/manta.R
manta/inst/doc/manta.Rnw
manta/inst/doc/manta.pdf
manta/inst/extdata
manta/inst/extdata/PapaGO-BLAST.results-diatoms.Rdata
manta/inst/extdata/PapaGO-BLAST.results-diatoms.tab
manta/inst/extdata/PapaGO-BWA.annot-diatoms.tab
manta/inst/extdata/PapaGO-BWA.counts-diatoms.tab
manta/inst/extdata/Pgranii-ambient.seastar
manta/inst/extdata/Pgranii-plusFe.seastar
manta/inst/extdata/pplacer
manta/inst/extdata/pplacer/KOG0035
manta/inst/extdata/pplacer/KOG0035/taxtable.db
manta/inst/extdata/pplacer/KOG0119
manta/inst/extdata/pplacer/KOG0119/taxtable.db
manta/inst/extdata/pplacer/KOG0521
manta/inst/extdata/pplacer/KOG0521/taxtable.db
manta/inst/script
manta/inst/script/manta.R
manta/man
manta/man/cmdArgsToVariables.Rd manta/man/collapseRepliCounts.Rd manta/man/compbiasPlot.Rd manta/man/compbiasTest.Rd manta/man/generateWeights.Rd manta/man/in2manta.Rd manta/man/makeSampleDF.Rd manta/man/manta-class.Rd manta/man/manta.Rd manta/man/meta2counts.Rd manta/man/metataxa2subcounts.Rd manta/man/nf2nr.Rd manta/man/normfact2absTMM.Rd manta/man/nr.Rd manta/man/outliers.Rd manta/man/plot.manta.Rd manta/man/pplacer2manta.Rd manta/man/readSeastar.Rd manta/man/seastar2counts.Rd manta/man/summary.manta.Rd
manta/vignettes
manta/vignettes/manta.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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