Description Usage Arguments Value See Also Examples
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1 |
x |
a MANTA object. |
n |
number of genes to return. |
p |
adjusted p-value cut-off. |
FC |
fold change cut-off. |
A.pct |
percentage of genes that should be right most outliers. |
uk.filter |
a character vector of unknown gene name paterns to filter out (eg 'lcl'). |
method |
multiple testing correction method from p.adjust |
verbose |
should the function print these results (or just return the table) |
a table of the outlier genes
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1 2 3 4 5 | manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta")
load(manta.path)
de <- exactTest(x)
outGenes(de)
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