makeSampleDF: Make a Sample Dataframe for use in Initializing a MANTA...
In manta: Microbial Assemblage Normalized Transcript Analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
The sample dataframe contains a row for each sample with a factor indicating grouping and library sizes.
Usage
1
makeSampleDF(counts, group=factor(colnames(counts)), lib.size=colSums(counts))
Arguments
counts
first number
group
a factor specifying which of each of count columns belong to each of the two conditions.
lib.size
the sizes (cumulative counts) of each of the libraries.
Value
a sample dataframe
See Also
DGEList, manta, setLibrarySizes
Examples
1
2
3
cts.path <- system.file("extdata","PapaGO-BWA.counts-diatoms.tab", package="manta")
cts <- read.delim(cts.path)
sdf <- makeSampleDF(counts=cts)
manta documentation built on Oct. 31, 2019, 3:03 a.m.
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Description Usage Arguments Value See Also Examples
Description
The sample dataframe contains a row for each sample with a factor indicating grouping and library sizes.
Usage
1 | makeSampleDF(counts, group=factor(colnames(counts)), lib.size=colSums(counts))
|
Arguments
counts |
first number |
group |
a factor specifying which of each of count columns belong to each of the two conditions. |
lib.size |
the sizes (cumulative counts) of each of the libraries. |
Value
a sample dataframe
See Also
DGEList, manta, setLibrarySizes
Examples
1 2 3 | cts.path <- system.file("extdata","PapaGO-BWA.counts-diatoms.tab", package="manta")
cts <- read.delim(cts.path)
sdf <- makeSampleDF(counts=cts)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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