BEAT: BEAT - BS-Seq Epimutation Analysis Toolkit

Model-based analysis of single-cell methylation data

Author
Kemal Akman <akman@mpipz.mpg.de>
Date of publication
None
Maintainer
Kemal Akman <akman@mpipz.mpg.de>
License
LGPL (>= 3.0)
Version
1.12.0

View on Bioconductor

Man pages

BEAT
BEAT - BS-Seq Epimutation Analysis Toolkit
epimutation_calls
Returns epimutation rates and sites.
generate_results
Computes model methylation states for genomic region counts...
makeParams
Creates a parameter object of arguments to be used with other...
positions
Sample dataset of CpG positions for a single cell BS-seq...
positions.reference
Sample dataset of CpG positions for a reference BS-Seq sample
positions_to_regions
Converts methylation counts for single genomic positions to...

Files in this package

BEAT/DESCRIPTION
BEAT/NAMESPACE
BEAT/R
BEAT/R/BEAT.R
BEAT/build
BEAT/build/vignette.rds
BEAT/data
BEAT/data/BEAT.RData
BEAT/inst
BEAT/inst/doc
BEAT/inst/doc/BEAT.R
BEAT/inst/doc/BEAT.Rnw
BEAT/inst/doc/BEAT.pdf
BEAT/inst/extdata
BEAT/inst/extdata/NonCpG.reference.txt
BEAT/inst/extdata/NonCpG.sample.txt
BEAT/inst/extdata/bsConversionRate.py
BEAT/inst/extdata/reference.positions.csv
BEAT/inst/extdata/sample.positions.csv
BEAT/man
BEAT/man/BEAT.Rd
BEAT/man/epimutation_calls.Rd
BEAT/man/generate_results.Rd
BEAT/man/makeParams.Rd
BEAT/man/positions.Rd
BEAT/man/positions.reference.Rd
BEAT/man/positions_to_regions.Rd
BEAT/vignettes
BEAT/vignettes/BEAT.Rnw
BEAT/vignettes/BEAT.bib
BEAT/vignettes/MethCalling.png
BEAT/vignettes/MethDensities.png