ssviz: A small RNA-seq visualizer and analysis toolkit

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Small RNA sequencing viewer

Author
Diana Low
Date of publication
None
Maintainer
Diana Low <lowdiana@gmail.com>
License
GPL-2
Version
1.8.0

View on Bioconductor

Man pages

counts
counts data
ctrlbam
ctrlbam data
getCountMatrix
getCountMatrix
getCountMatrix-methods
getCountMatrix
logicalORmissing-class
Class '"logicalORmissing"'
ntfreq
ntfreq
ntfreq-methods
ntfreq
pctrlbam
pctrlbam data
pingpong
pingpong
pingpong-methods
pingpong
plotDistro
plotDistro
plotDistro-methods
plotDistro
plotFreq
plotFreq
plotFreq-methods
plotFreq
plotPP
plotPP
plotPP-methods
plotPP
plotRegion
plotRegion
plotRegion-methods
plotRegion
ptreatbam
ptreatbam data
readBam
readBam
readBam-methods
readBam
ssviz-package
ssviz
treatbam
treatbam data

Files in this package

ssviz/DESCRIPTION
ssviz/NAMESPACE
ssviz/NEWS
ssviz/R
ssviz/R/AllClasses.R
ssviz/R/AllGenerics.R
ssviz/R/helper.R
ssviz/build
ssviz/build/vignette.rds
ssviz/data
ssviz/data/ssviz.rda
ssviz/inst
ssviz/inst/doc
ssviz/inst/doc/ssviz.R
ssviz/inst/doc/ssviz.Rnw
ssviz/inst/doc/ssviz.pdf
ssviz/inst/extdata
ssviz/inst/extdata/ctrl.bam
ssviz/inst/extdata/treat.bam
ssviz/man
ssviz/man/counts.Rd
ssviz/man/ctrlbam.Rd
ssviz/man/getCountMatrix-methods.Rd
ssviz/man/getCountMatrix.Rd
ssviz/man/logicalORmissing-class.Rd
ssviz/man/ntfreq-methods.Rd
ssviz/man/ntfreq.Rd
ssviz/man/pctrlbam.Rd
ssviz/man/pingpong-methods.Rd
ssviz/man/pingpong.Rd
ssviz/man/plotDistro-methods.Rd
ssviz/man/plotDistro.Rd
ssviz/man/plotFreq-methods.Rd
ssviz/man/plotFreq.Rd
ssviz/man/plotPP-methods.Rd
ssviz/man/plotPP.Rd
ssviz/man/plotRegion-methods.Rd
ssviz/man/plotRegion.Rd
ssviz/man/ptreatbam.Rd
ssviz/man/readBam-methods.Rd
ssviz/man/readBam.Rd
ssviz/man/ssviz-package.Rd
ssviz/man/treatbam.Rd
ssviz/vignettes
ssviz/vignettes/pingpong.png
ssviz/vignettes/plotdistro1.png
ssviz/vignettes/plotdistro2.png
ssviz/vignettes/plotfreq.png
ssviz/vignettes/plotregion.png
ssviz/vignettes/ssviz.Rnw
ssviz/vignettes/workflow.png