getCountMatrix-methods: getCountMatrix

Description Methods


returns the bam data.frame with an additional column counts. Only relevant if the fasta file used for mapping input was previously collapsed via fastx_toolkit to return a fasta read name in the format of readnumber-totalcounts



Returns and object of class data.frame having the values from the original bam file with an additional 'count' column.

ssviz documentation built on Nov. 17, 2017, 9:02 a.m.