logicFS: Identification of SNP Interactions

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

AuthorHolger Schwender
Date of publicationNone
MaintainerHolger Schwender <holger.schw@gmx.de>
LicenseLGPL (>= 2)
Version1.44.0

View on Bioconductor

Functions

cl.logicfs Man page
contr.none Man page
contr.snps Man page
data.logicfs Man page
getMatEval Man page
getXy Man page
logic.bagging Man page
logic.bagging.default Man page
logic.bagging.formula Man page
logicFS Man page
logicFS.default Man page
logicFS.formula Man page
logic.oob Man page
logic.pimp Man page
make.snp.dummy Man page
mlogreg Man page
mlogreg.default Man page
mlogreg.formula Man page
plot.logicBagg Man page
plot.logicFS Man page
predict.logicBagg Man page
predict.logregmodel Man page
predict.mlogreg Man page
print.logicBagg Man page
print.logicFS Man page
print.mlogreg Man page
vim.approxPval Man page
vim.chisq Man page
vim.ebam Man page
vim.individual Man page
vim.input Man page
vim.logicFS Man page
vim.norm Man page
vim.permInput Man page
vim.permSet Man page
vim.permSNP Man page
vim.set Man page
vim.signperm Man page
vim.singleBoth Man page
vim.singleRemove Man page
vim.snp Man page

Files

logicFS/DESCRIPTION
logicFS/NAMESPACE
logicFS/R
logicFS/R/check.listprimes.R logicFS/R/check.mat.imp.R logicFS/R/check4NullModels.R logicFS/R/checkDataCl.R logicFS/R/checkNewTree.R logicFS/R/checkSet.R logicFS/R/compLarger.R logicFS/R/compMatImpIndividual1.R logicFS/R/compMatImpIndividual3.R logicFS/R/compMatImpSet1.R logicFS/R/compMatImpSet3.R logicFS/R/compMatProbMLR.R logicFS/R/contr.none.R logicFS/R/contr.snps.R logicFS/R/correctMultinomial.R logicFS/R/correctPreds1.R logicFS/R/correctPredsPermute1.R logicFS/R/correctPredsPermute3.R logicFS/R/correctPredsRemove1.R logicFS/R/correctPredsRemove3.R logicFS/R/correctQuantitative.R logicFS/R/correctSetPermute1.R logicFS/R/correctSetPermute3.R logicFS/R/correctSetRemove1.R logicFS/R/correctSetRemove3.R logicFS/R/getKnots.R logicFS/R/getMatEval.R logicFS/R/getNames.R logicFS/R/getNewTree.R logicFS/R/getTree.R logicFS/R/getVarInTree.R logicFS/R/getXy.R logicFS/R/getXyPred.R logicFS/R/getY.R logicFS/R/logic.bagging.R logicFS/R/logic.oob.R logicFS/R/logic.pimp.R logicFS/R/logicFS.R logicFS/R/make.snp.dummy.R logicFS/R/makeContrastList.R logicFS/R/mlogreg.R logicFS/R/modelMat.R logicFS/R/oobMLR.R logicFS/R/plot.logicBagg.R logicFS/R/plot.logicFS.R logicFS/R/predict.logicBagg.R logicFS/R/predict.logregmodel.R logicFS/R/predict.mlogreg.R logicFS/R/predictMLB.R logicFS/R/print.logicBagg.R logicFS/R/print.logicFS.R logicFS/R/print.mlogreg.R logicFS/R/standardizeMatImp.R logicFS/R/vim.MLR.R logicFS/R/vim.approxPval.R logicFS/R/vim.chisq.R logicFS/R/vim.ebam.R logicFS/R/vim.individual.R logicFS/R/vim.lm.R logicFS/R/vim.logicFS.R logicFS/R/vim.multiple.R logicFS/R/vim.multiple.oneprime.R logicFS/R/vim.norm.R logicFS/R/vim.permInput.R logicFS/R/vim.permSet.R logicFS/R/vim.set.R logicFS/R/vim.signperm.R logicFS/R/vim.single.R logicFS/R/zzz.R
logicFS/build
logicFS/build/vignette.rds
logicFS/data
logicFS/data/data.logicfs.RData
logicFS/inst
logicFS/inst/doc
logicFS/inst/doc/logicFS.R
logicFS/inst/doc/logicFS.Rnw
logicFS/inst/doc/logicFS.pdf
logicFS/man
logicFS/man/data.logicfs.Rd logicFS/man/getMatEval.Rd logicFS/man/logic.bagging.Rd logicFS/man/logic.oob.Rd logicFS/man/logic.pimp.Rd logicFS/man/logicFS-internal.Rd logicFS/man/logicFS.Rd logicFS/man/make.snp.dummy.Rd logicFS/man/mlogreg.Rd logicFS/man/plot.logicFS.Rd logicFS/man/predict.logicBagg.Rd logicFS/man/predict.mlogreg.Rd logicFS/man/print.logicFS.Rd logicFS/man/vim.approxPval.Rd logicFS/man/vim.chisq.Rd logicFS/man/vim.ebam.Rd logicFS/man/vim.individual.Rd logicFS/man/vim.logicFS.Rd logicFS/man/vim.norm.Rd logicFS/man/vim.permSet.Rd logicFS/man/vim.set.Rd
logicFS/vignettes
logicFS/vignettes/logicFS.Rnw
logicFS/vignettes/logicfs.png
logicFS/vignettes/logicfs.ps

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