logicFS: Identification of SNP Interactions

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

AuthorHolger Schwender
Date of publicationNone
MaintainerHolger Schwender <holger.schw@gmx.de>
LicenseLGPL (>= 2)
Version1.44.0

View on Bioconductor

Files in this package

logicFS/DESCRIPTION
logicFS/NAMESPACE
logicFS/R
logicFS/R/check.listprimes.R logicFS/R/check.mat.imp.R logicFS/R/check4NullModels.R logicFS/R/checkDataCl.R logicFS/R/checkNewTree.R logicFS/R/checkSet.R logicFS/R/compLarger.R logicFS/R/compMatImpIndividual1.R logicFS/R/compMatImpIndividual3.R logicFS/R/compMatImpSet1.R logicFS/R/compMatImpSet3.R logicFS/R/compMatProbMLR.R logicFS/R/contr.none.R logicFS/R/contr.snps.R logicFS/R/correctMultinomial.R logicFS/R/correctPreds1.R logicFS/R/correctPredsPermute1.R logicFS/R/correctPredsPermute3.R logicFS/R/correctPredsRemove1.R logicFS/R/correctPredsRemove3.R logicFS/R/correctQuantitative.R logicFS/R/correctSetPermute1.R logicFS/R/correctSetPermute3.R logicFS/R/correctSetRemove1.R logicFS/R/correctSetRemove3.R logicFS/R/getKnots.R logicFS/R/getMatEval.R logicFS/R/getNames.R logicFS/R/getNewTree.R logicFS/R/getTree.R logicFS/R/getVarInTree.R logicFS/R/getXy.R logicFS/R/getXyPred.R logicFS/R/getY.R logicFS/R/logic.bagging.R logicFS/R/logic.oob.R logicFS/R/logic.pimp.R logicFS/R/logicFS.R logicFS/R/make.snp.dummy.R logicFS/R/makeContrastList.R logicFS/R/mlogreg.R logicFS/R/modelMat.R logicFS/R/oobMLR.R logicFS/R/plot.logicBagg.R logicFS/R/plot.logicFS.R logicFS/R/predict.logicBagg.R logicFS/R/predict.logregmodel.R logicFS/R/predict.mlogreg.R logicFS/R/predictMLB.R logicFS/R/print.logicBagg.R logicFS/R/print.logicFS.R logicFS/R/print.mlogreg.R logicFS/R/standardizeMatImp.R logicFS/R/vim.MLR.R logicFS/R/vim.approxPval.R logicFS/R/vim.chisq.R logicFS/R/vim.ebam.R logicFS/R/vim.individual.R logicFS/R/vim.lm.R logicFS/R/vim.logicFS.R logicFS/R/vim.multiple.R logicFS/R/vim.multiple.oneprime.R logicFS/R/vim.norm.R logicFS/R/vim.permInput.R logicFS/R/vim.permSet.R logicFS/R/vim.set.R logicFS/R/vim.signperm.R logicFS/R/vim.single.R logicFS/R/zzz.R
logicFS/build
logicFS/build/vignette.rds
logicFS/data
logicFS/data/data.logicfs.RData
logicFS/inst
logicFS/inst/doc
logicFS/inst/doc/logicFS.R
logicFS/inst/doc/logicFS.Rnw
logicFS/inst/doc/logicFS.pdf
logicFS/man
logicFS/man/data.logicfs.Rd logicFS/man/getMatEval.Rd logicFS/man/logic.bagging.Rd logicFS/man/logic.oob.Rd logicFS/man/logic.pimp.Rd logicFS/man/logicFS-internal.Rd logicFS/man/logicFS.Rd logicFS/man/make.snp.dummy.Rd logicFS/man/mlogreg.Rd logicFS/man/plot.logicFS.Rd logicFS/man/predict.logicBagg.Rd logicFS/man/predict.mlogreg.Rd logicFS/man/print.logicFS.Rd logicFS/man/vim.approxPval.Rd logicFS/man/vim.chisq.Rd logicFS/man/vim.ebam.Rd logicFS/man/vim.individual.Rd logicFS/man/vim.logicFS.Rd logicFS/man/vim.norm.Rd logicFS/man/vim.permSet.Rd logicFS/man/vim.set.Rd
logicFS/vignettes
logicFS/vignettes/logicFS.Rnw
logicFS/vignettes/logicfs.png
logicFS/vignettes/logicfs.ps

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