DanrleyRF/SWeeP: Functions to creation of low dimensional comparative matrices of Amino Acid Sequence occurrences

The SWeeP method was developed to favor the analizes between amino acids sequences and to assist alignment free phylogenetic studies. This method is based on the concept of sparse words, which is applied in the scan of biological sequences and its the conversion in a matrix of ocurrences. Aiming the generation of low dimensional matrices of Amino Acid Sequence occurrences.

Getting started

Package details

Bioconductor views Alignment Genetics Sequencing Software StatisticalMethod SupportVectorMachine Technology
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
DanrleyRF/SWeeP documentation built on Nov. 24, 2020, 5:41 a.m.