CSAR: Statistical tools for the analysis of ChIP-seq data

Statistical tools for ChIP-seq data analysis. The package includes the statistical method described in Kaufmann et al. (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average DNA fragment size subjected to sequencing into account, the software calculates genomic single-nucleotide read-enrichment values. After normalization, sample and control are compared using a test based on the Poisson distribution. Test statistic thresholds to control the false discovery rate are obtained through random permutation.

Install the latest version of this package by entering the following in R:
AuthorJose M Muino
Bioconductor views ChIPSeq Genetics Transcription
Date of publicationNone
MaintainerJose M Muino <jose.muino@wur.nl>

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