CSAR: Statistical tools for the analysis of ChIP-seq data

Statistical tools for ChIP-seq data analysis. The package includes the statistical method described in Kaufmann et al. (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average DNA fragment size subjected to sequencing into account, the software calculates genomic single-nucleotide read-enrichment values. After normalization, sample and control are compared using a test based on the Poisson distribution. Test statistic thresholds to control the false discovery rate are obtained through random permutation.

Package details

AuthorJose M Muino
Bioconductor views ChIPSeq Genetics Transcription
MaintainerJose M Muino <[email protected]>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

Try the CSAR package in your browser

Any scripts or data that you put into this service are public.

CSAR documentation built on Nov. 1, 2018, 2:22 a.m.