Statistical tools for ChIPseq data analysis. The package includes the statistical method described in Kaufmann et al. (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average DNA fragment size subjected to sequencing into account, the software calculates genomic singlenucleotide readenrichment values. After normalization, sample and control are compared using a test based on the Poisson distribution. Test statistic thresholds to control the false discovery rate are obtained through random permutation.
Package details 


Author  Jose M Muino 
Bioconductor views  ChIPSeq Genetics Transcription 
Maintainer  Jose M Muino <[email protected]> 
License  Artistic2.0 
Version  1.28.0 
Package repository  View on Bioconductor 
Installation 
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