|ChIPseqScore||Calculate read-enrichment scores for each nucleotide position|
|CSAR-package||Statistical tools for the analysis of ChIP-seq data|
|distance2Genes||Calculate relative positions of read-enriched regions...|
|genesWithPeaks||Provide table of genes with read-enriched regions, and their...|
|getPermutatedWinScores||Obtain the read-enrichment score distribution under the null...|
|getThreshold||Calculate the threshold value corresponding to control FDR at...|
|loadMappedReads||Load mapped reads|
|mappedReads2Nhits||Calculate number of overlapped extended reads per nucleotide...|
|permutatedWinScores||Calculate scores for permutated read-enriched regions|
|sampleSEP3_test||Partial dataset of a ChIP-seq experiment|
|score2wig||Save the read-enrichment scores at each nucleotide position...|
|sigWin||Calculate regions of read-enrichment|
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