riboSeqR: Analysis of sequencing data from ribosome profiling experiments

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

AuthorThomas J. Hardcastle
Date of publicationNone
MaintainerThomas J. Hardcastle <tjh48@cam.ac.uk>
LicenseGPL-3
Version1.8.0

View on Bioconductor

Files

riboSeqR/DESCRIPTION
riboSeqR/NAMESPACE
riboSeqR/R
riboSeqR/R/AllClasses.R riboSeqR/R/filterHits.R riboSeqR/R/findCDS.R riboSeqR/R/frameCounting.R riboSeqR/R/frameShift.R riboSeqR/R/lengthDist.R riboSeqR/R/libScales.R riboSeqR/R/plotCodons.R riboSeqR/R/plotTranscript.R riboSeqR/R/readRibodata.R riboSeqR/R/riboCoding-methods.R riboSeqR/R/riboSeq-internal.R riboSeqR/R/sliceCounts.R riboSeqR/R/tableOverlaps.R
riboSeqR/build
riboSeqR/build/vignette.rds
riboSeqR/inst
riboSeqR/inst/CITATION
riboSeqR/inst/NEWS
riboSeqR/inst/doc
riboSeqR/inst/doc/riboSeqR.R
riboSeqR/inst/doc/riboSeqR.Rnw
riboSeqR/inst/doc/riboSeqR.pdf
riboSeqR/inst/extdata
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index10
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index12
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index14
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index16
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index17
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index17_short
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index3
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index5
riboSeqR/inst/extdata/chlamy236_plus_deNovo_plusOnly_Index7
riboSeqR/inst/extdata/ribotable.txt
riboSeqR/inst/extdata/rsem_chlamy236_deNovo.transcripts.fa
riboSeqR/inst/extdata/unit_test.fasta
riboSeqR/inst/unitTests
riboSeqR/inst/unitTests/testing.R
riboSeqR/man
riboSeqR/man/filterHits.Rd riboSeqR/man/findCDS.Rd riboSeqR/man/frameCounting.Rd riboSeqR/man/frameShift.Rd riboSeqR/man/lengthDist.Rd riboSeqR/man/libScales.Rd riboSeqR/man/plotCDS.Rd riboSeqR/man/plotTranscript.Rd riboSeqR/man/readRibodata.Rd riboSeqR/man/riboCoding-class.Rd riboSeqR/man/riboData-class.Rd riboSeqR/man/riboSeqR-package.Rd riboSeqR/man/rnaCounts.Rd riboSeqR/man/sliceCounts.Rd
riboSeqR/tests
riboSeqR/tests/runTests.R
riboSeqR/vignettes
riboSeqR/vignettes/_TZ_14128-node7-plantsci-internal-cam-ac-uk.tex
riboSeqR/vignettes/riboSeqR.Rnw

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