|filterHits||Filters framecalled data based on the mean number of hits...|
|findCDS||Parses a transcriptome file looking for start/stop codons in...|
|frameCounting||Counts aligned reads within coding sequence regions by frame...|
|frameShift||Analyses frame called ribosome footprint data within coding...|
|lengthDist||A function plotting the density of lengths in a riboData...|
|libScales||Generates library scaling factors from ribosome footprint...|
|logoContext||Produces a motif of coding start context|
|plotCDS||Plots average ribosome footprint alignment to coding...|
|plotTranscript||Plots ribosome footprint abundance and mRNA coverage (if...|
|readRibodata||Reads ribosomal and (optionally) rna data from alignment...|
|riboSeqR-package||Analysis of sequencing data from ribosome profiling...|
|rnaCounts||Extracts mRNA counts from a riboDat object for a set of...|
|sliceCounts||Slices out count data from riboCoding object for use in...|
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