hummelma/TEQC: Quality control for target capture experiments

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Getting started

Package details

AuthorM. Hummel, S. Bonnin, E. Lowy, G. Roma
Bioconductor views Genetics Microarray QualityControl Sequencing
MaintainerManuela Hummel <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
hummelma/TEQC documentation built on July 2, 2018, 9:43 p.m.