yycunc/FIREcaller: FIREcaller: an R package for detecting frequently interacting regions from Hi-C data

This function FIREcaller is a user-friendly R package for detecting FIREs from Hi-C data. FIREcaller takes raw Hi-C contact matrix as input, performs within-sample and cross-sample normaliza-tion via HiCNormCis and quantile normalization respectively, and outputs FIRE scores, FIREs and super-FIREs.

Getting started

Package details

Authorc(person("Cheynna", "Crowley", email = "cacrowle@live.unc.edu", role = c("aut", "cre")), person("Yuchen", "Yang", email = "yyuchen@email.unc.edu", role = c("aut")), person("Ming", "Hu", email = "afhuming@gmail.com", role = c("aut")), person("Yun", "Li", email = "yunli@med.unc.edu", role = c("aut")))
Bioconductor views GUI Genetics Software
MaintainerCheynna Crowley <cacrowle@live.unc.edu>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
yycunc/FIREcaller documentation built on Nov. 13, 2022, 7:49 p.m.