PapenfussLab/StructuralVariantAnnotation
VariantionAnnoration for Structural Variants

Package index
Search the PapenfussLab/StructuralVariantAnnotation package
Vignettes
Man pages
20
Popular Man pages
aggregateFunctionsFor: Returns a list of aggegration functions for the given variant... bedpe2breakpointgr: Loads a breakpoint GRanges from a BEDPE file breakpointRanges: Extracts the structural variants as a BreakendGRanges findBreakpointOverlaps: Finds overlapping breakpoints by requiring that breakends on... isStructural: Determines whether the variant is a structural variant isSymbolic: Determines whether the variant is a symbolic allele pairs2breakpointgr: Converts a BEDPE Pairs containing pairs of GRanges loaded...
Browse all...
API
55
Popular API
unpack transformFunctionsFor partner pairwiseLCPrefix pairs2breakpointgr isSymbolic isStructural
Browse all...
Browse all...
Source code
13
Popular Source code
tests/testthat/test-util.R tests/testthat/test-extensions-VCF.R tests/testthat/test-extensions-DataFrame.R tests/testthat/test-BreakpointGRanges.R tests/testthat-StructuralVariantAnnotation.R na12878.R R/vcfConstants.R
Browse all...
Browse all...
Home
/
GitHub
/
PapenfussLab/StructuralVariantAnnotation: VariantionAnnoration for Structural Variants

PapenfussLab/StructuralVariantAnnotation: VariantionAnnoration for Structural Variants
Version 0.7.1

StructuralVariantAnnotation contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

Getting started

README.md

Browse package contents

Vignettes Man pages API and functions Files

Package details
AuthorDaniel Cameron
MaintainerDaniel Cameron <[email protected]>
LicenseGPL-3
Version0.7.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R: 
install.packages("devtools")
library(devtools)
install_github("PapenfussLab/StructuralVariantAnnotation")
PapenfussLab/StructuralVariantAnnotation documentation built on Aug. 25, 2018, 12:17 p.m.

R Package Documentation

rdrr.io home R language documentation Run R code online Create free R Jupyter Notebooks

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
[email protected]
Personal blog

As an Amazon Associate I earn from qualifying purchases.
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close