align_breakpoints: Adjusting the nominal position of a pair of partnered...

Description Usage Arguments Value

View source: R/extensions-VCF.R

Description

Adjusting the nominal position of a pair of partnered breakpoint.

Usage

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align_breakpoints(
  vcf,
  align = c("centre"),
  is_higher_breakend = names(vcf) < info(vcf)$PARID
)

Arguments

vcf

A VCF object.

align

The alignment type.

is_higher_breakend

Breakpoint ID ordering.

Value

A VCF object with adjusted nominal positions.


PapenfussLab/StructuralVariantAnnotation documentation built on Dec. 25, 2021, 1:20 a.m.