simpleEventType: Type of simplest explanation of event. Possible types are: |...
In PapenfussLab/StructuralVariantAnnotation: Variant annotations for structural variants
Description
Usage
Arguments
Value
View source: R/BreakpointGRanges.R
Description
Note that both ++ and – breakpoint will be classified as inversions regardless of whether both breakpoint that consistitute an actual inversion exists or not
Usage
1
simpleEventType(gr, insertionLengthThreshold = 0.5)
Arguments
gr
breakpoint GRanges object
insertionLengthThreshold
portion of inserted bases compared to total event size to be classified as an insertion.
For example, a 5bp deletion with 5 inserted bases will be classified as an INS event.
Value
Type of simplest explanation of event
PapenfussLab/StructuralVariantAnnotation documentation built on Dec. 25, 2021, 1:20 a.m.
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Description Usage Arguments Value
View source: R/BreakpointGRanges.R
Description
Note that both ++ and – breakpoint will be classified as inversions regardless of whether both breakpoint that consistitute an actual inversion exists or not
Usage
1 | simpleEventType(gr, insertionLengthThreshold = 0.5)
|
Arguments
gr |
breakpoint GRanges object |
insertionLengthThreshold |
portion of inserted bases compared to total event size to be classified as an insertion. For example, a 5bp deletion with 5 inserted bases will be classified as an INS event. |
Value
Type of simplest explanation of event
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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