findInsDupOverlaps: Finds duplication events that are reported as inserts. As...

Description Usage Arguments Value

View source: R/BreakpointGRanges.R

Description

WARNING: this method does not check that the inserted sequence actually matched the duplicated sequence.

Usage

1
findInsDupOverlaps(query, subject, maxgap = -1L, maxsizedifference = 0L)

Arguments

query

a breakpoint GRanges object

subject

a breakpoint GRanges object

maxgap

maximum distance between the insertion position and the duplication

maxsizedifference

maximum size difference between the duplication and insertion.

Value

Hits object containing the ordinals of the matching breakends in the query and subject


PapenfussLab/StructuralVariantAnnotation documentation built on Dec. 25, 2021, 1:20 a.m.