findInsDupOverlaps: Finds duplication events that are reported as inserts. As...
In PapenfussLab/StructuralVariantAnnotation: Variant annotations for structural variants
Description
Usage
Arguments
Value
View source: R/BreakpointGRanges.R
Description
WARNING: this method does not check that the inserted sequence actually matched the duplicated sequence.
Usage
1
findInsDupOverlaps(query, subject, maxgap = -1L, maxsizedifference = 0L)
Arguments
query
a breakpoint GRanges object
subject
a breakpoint GRanges object
maxgap
maximum distance between the insertion position and the duplication
maxsizedifference
maximum size difference between the duplication and insertion.
Value
Hits object containing the ordinals of the matching breakends
in the query and subject
PapenfussLab/StructuralVariantAnnotation documentation built on Dec. 25, 2021, 1:20 a.m.
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Description Usage Arguments Value
View source: R/BreakpointGRanges.R
Description
WARNING: this method does not check that the inserted sequence actually matched the duplicated sequence.
Usage
1 | findInsDupOverlaps(query, subject, maxgap = -1L, maxsizedifference = 0L)
|
Arguments
query |
a breakpoint GRanges object |
subject |
a breakpoint GRanges object |
maxgap |
maximum distance between the insertion position and the duplication |
maxsizedifference |
maximum size difference between the duplication and insertion. |
Value
Hits object containing the ordinals of the matching breakends in the query and subject
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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