extractBreakpointSequence: Extracts the breakpoint sequence.
In PapenfussLab/StructuralVariantAnnotation: Variant annotations for structural variants
Description
Usage
Arguments
Details
Value
View source: R/BreakpointGRanges.R
Description
Extracts the breakpoint sequence.
Usage
1
extractBreakpointSequence(gr, ref, anchoredBases, remoteBases = anchoredBases)
Arguments
gr
breakpoint GRanges
ref
Reference BSgenome
anchoredBases
Number of bases leading into breakpoint to extract
remoteBases
Number of bases from other side of breakpoint to extract
Details
The sequence is the sequenced traversed from the reference anchor bases
to the breakpoint. For backward (-) breakpoints, this corresponds to the
reverse compliment of the reference sequence bases.
Value
Breakpoint sequence around the variant position.
PapenfussLab/StructuralVariantAnnotation documentation built on Dec. 25, 2021, 1:20 a.m.
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Description Usage Arguments Details Value
View source: R/BreakpointGRanges.R
Description
Extracts the breakpoint sequence.
Usage
1 | extractBreakpointSequence(gr, ref, anchoredBases, remoteBases = anchoredBases)
|
Arguments
gr |
breakpoint GRanges |
ref |
Reference BSgenome |
anchoredBases |
Number of bases leading into breakpoint to extract |
remoteBases |
Number of bases from other side of breakpoint to extract |
Details
The sequence is the sequenced traversed from the reference anchor bases to the breakpoint. For backward (-) breakpoints, this corresponds to the reverse compliment of the reference sequence bases.
Value
Breakpoint sequence around the variant position.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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