StructuralVariantAnnotation: StructuralVariantAnnotation: a package for SV annotation
In PapenfussLab/StructuralVariantAnnotation: Variant annotations for structural variants
Description
StructuralVariantAnnotation contains useful helper functions for reading
and interpreting structural variants calls. The packages contains functions
for parsing VCFs from a number of popular caller as well as functions for
dealing with breakpoints involving two separate genomic loci. The package
takes a 'GRanges' based breakend-centric approach.
Details
* Parse VCF objects with the 'breakpointRanges()' and 'breakendRanges()'functions.
* Find breakpoint overlaps with the 'findBreakpointOverlaps()'
and 'countBreakpointOverlaps()' functions.
* Generate BEDPE files for circos plot with 'breakpointgr2pairs()' function.
* ...
For more details on the features of StructuralVariantAnnotation, read the vignette:
'browseVignettes(package = "StructuralVariantAnnotation")'
PapenfussLab/StructuralVariantAnnotation documentation built on Dec. 25, 2021, 1:20 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
StructuralVariantAnnotation contains useful helper functions for reading and interpreting structural variants calls. The packages contains functions for parsing VCFs from a number of popular caller as well as functions for dealing with breakpoints involving two separate genomic loci. The package takes a 'GRanges' based breakend-centric approach.
Details
* Parse VCF objects with the 'breakpointRanges()' and 'breakendRanges()'functions. * Find breakpoint overlaps with the 'findBreakpointOverlaps()' and 'countBreakpointOverlaps()' functions. * Generate BEDPE files for circos plot with 'breakpointgr2pairs()' function. * ...
For more details on the features of StructuralVariantAnnotation, read the vignette: 'browseVignettes(package = "StructuralVariantAnnotation")'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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