FamAgg: Pedigree Analysis and Familial Aggregation

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Framework providing basic pedigree analysis and plotting utilities as well as a variety of methods to evaluate familial aggregation of traits in large pedigrees.

Author
J. Rainer, D. Taliun, C.X. Weichenberger
Date of publication
None
Maintainer
Johannes Rainer <johannes.rainer@eurac.edu>
License
MIT + file LICENSE
Version
1.2.1
URLs

View on Bioconductor

Man pages

defineControls
Define sets of control individuals for one or more given...
FAData
Pedigree data information
FAData-analysis
Pedigree analysis and familial aggregation methods
FAGenIndexResults
Genealogical Index
FAIncidenceRateResults
Familial Incidence Rate
FAKinGroupResults
Kinship group test
FAKinSumResults
Kinship sum test
FAProbResults
Probability test
FAStdIncidenceRateResults
Familial Standardized Incidence Rate
Pedigree-utils
Basic pedigree utilities
plotting-functions
Pedigree plotting functions

Files in this package

FamAgg/DESCRIPTION
FamAgg/LICENSE
FamAgg/NAMESPACE
FamAgg/R
FamAgg/R/Classes.R
FamAgg/R/Constructors.R
FamAgg/R/Generics.R
FamAgg/R/Methods-FAData.R
FamAgg/R/Methods-FAGenIndexResults.R
FamAgg/R/Methods-FAIncidenceRateResults.R
FamAgg/R/Methods-FAKinGroupResults.R
FamAgg/R/Methods-FAKinSumResults.R
FamAgg/R/Methods-FAProbResults.R
FamAgg/R/Methods-FAStdIncidenceRateResults.R
FamAgg/R/Methods.R
FamAgg/R/import-export.R
FamAgg/R/matched-controls.R
FamAgg/R/plotting-functions.R
FamAgg/R/utils.R
FamAgg/R/zzz.R
FamAgg/build
FamAgg/build/vignette.rds
FamAgg/inst
FamAgg/inst/CITATION
FamAgg/inst/NEWS
FamAgg/inst/doc
FamAgg/inst/doc/FamAgg.R
FamAgg/inst/doc/FamAgg.Rmd
FamAgg/inst/doc/FamAgg.html
FamAgg/inst/perl
FamAgg/inst/perl/HaploPainter1.043.pl
FamAgg/inst/txt
FamAgg/inst/txt/Large-cliques.txt
FamAgg/inst/txt/Large.ped
FamAgg/inst/txt/minnbreast_default_cliques.txt
FamAgg/inst/txt/minnbreastsub-bad.ped.gz
FamAgg/inst/txt/minnbreastsub.ped.gz
FamAgg/inst/txt/minnbreastsub.txt
FamAgg/inst/unitTests
FamAgg/inst/unitTests/test_FAData.R
FamAgg/inst/unitTests/test_controls_N_sampling.R
FamAgg/inst/unitTests/test_fsir.R
FamAgg/inst/unitTests/test_genealogical_index.R
FamAgg/inst/unitTests/test_incidence_ratio.R
FamAgg/inst/unitTests/test_internals.R
FamAgg/inst/unitTests/test_kinship_group.R
FamAgg/inst/unitTests/test_kinship_sum.R
FamAgg/inst/unitTests/test_plotting.R
FamAgg/inst/unitTests/test_probability.R
FamAgg/inst/unitTests/test_utilities.R
FamAgg/man
FamAgg/man/FAData-analysis.Rd
FamAgg/man/FAData.Rd
FamAgg/man/FAGenIndexResults.Rd
FamAgg/man/FAIncidenceRateResults.Rd
FamAgg/man/FAKinGroupResults.Rd
FamAgg/man/FAKinSumResults.Rd
FamAgg/man/FAProbResults.Rd
FamAgg/man/FAStdIncidenceRateResults.Rd
FamAgg/man/Pedigree-utils.Rd
FamAgg/man/defineControls.Rd
FamAgg/man/plotting-functions.Rd
FamAgg/tests
FamAgg/tests/runTests.R
FamAgg/vignettes
FamAgg/vignettes/FamAgg.Rmd
FamAgg/vignettes/FamAgg.org
FamAgg/vignettes/biomed-central.csl
FamAgg/vignettes/references.bib