CAnD: Perform Chromosomal Ancestry Differences (CAnD) Analyses

Functions to perform the CAnD test on a set of ancestry proportions. For a particular ancestral subpopulation, a user will supply the estimated ancestry proportion for each sample, and each chromosome or chromosomal segment of interest. A p-value for each chromosome as well as an overall CAnD p-value will be returned for each test. Plotting functions are also available.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CAnD")
AuthorCaitlin McHugh, Timothy Thornton
Bioconductor views GeneticVariability Genetics SNP StatisticalMethod
Date of publicationNone
MaintainerCaitlin McHugh <mchughc@uw.edu>
LicenseArtistic-2.0
Version1.6.0

View on Bioconductor

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