Functions to perform the CAnD test on a set of ancestry proportions. For a particular ancestral subpopulation, a user will supply the estimated ancestry proportion for each sample, and each chromosome or chromosomal segment of interest. A p-value for each chromosome as well as an overall CAnD p-value will be returned for each test. Plotting functions are also available.
|Author||Caitlin McHugh, Timothy Thornton|
|Date of publication||None|
|Maintainer||Caitlin McHugh <firstname.lastname@example.org>|
ancestries: Sample Chromosomal Proportions of Ancestral Subpopulations to...
barPlotAncest: Create a Barplot of Ancestry Proportion Estimates for Every...
BonfCorr-method: ~~ Methods for Function 'BonfCorr' ~~
calc_combP: Calculate the Combined CAnD Test Statistic P-value
CAnD: Peform the CAnD Test
CAnDResult-class: Class '"CAnDResult"'
getDiffMatrices: Calculate the Mean Ancestry Proportion Excluding Each...
overallpValue-method: ~~ Methods for Function 'overallpValue' ~~
overallStatistic-method: ~~ Methods for Function 'overallStatistic' ~~
plotPvals: Create a Plot of P-Values for Each Chromosome or Chromosomal...
pValues-method: ~~ Methods for Function 'pValues' ~~
test-method: ~~ Methods for Function 'test' ~~