getDiffMatrices: Calculate the Mean Ancestry Proportion Excluding Each...
In CAnD: Perform Chromosomal Ancestry Differences (CAnD) Analyses
Description
Usage
Arguments
Details
Value
Author(s)
View source: R/getDiffMatrices.R
Description
A helper function to calculate the mean ancestry proportion for a
given subpopulation, excluding each chromosome/chromosomal segment
in turn.
Usage
1
getDiffMatrices(chrAncest, diff = TRUE)
Arguments
chrAncest
A data.frame holding the ancestral proportions;
each row corresponds to a sample and each column corresponds to a
chromosomal/chromosomal segment ancestry proportion.
Note: only include the proportions for one ancestral population at a time.
diff
A logical argment indicating whether the difference
between the pooled mean and the chromosomal mean should be returned,
or whether simply the pooled mean should be returned.
Details
This function calculates the mean ancestry proportion of a given
subpopulation excluding each chromosome in turn.
Value
A matrix of chromosomal ancestry differences.
Author(s)
Caitlin McHugh
mchughc@uw.edu
CAnD documentation built on Nov. 8, 2020, 8:18 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s)
View source: R/getDiffMatrices.R
Description
A helper function to calculate the mean ancestry proportion for a given subpopulation, excluding each chromosome/chromosomal segment in turn.
Usage
1 | getDiffMatrices(chrAncest, diff = TRUE)
|
Arguments
chrAncest |
A data.frame holding the ancestral proportions; each row corresponds to a sample and each column corresponds to a chromosomal/chromosomal segment ancestry proportion. Note: only include the proportions for one ancestral population at a time. |
diff |
A logical argment indicating whether the difference between the pooled mean and the chromosomal mean should be returned, or whether simply the pooled mean should be returned. |
Details
This function calculates the mean ancestry proportion of a given subpopulation excluding each chromosome in turn.
Value
A matrix of chromosomal ancestry differences.
Author(s)
Caitlin McHugh mchughc@uw.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.