Nucleosome positioning for Tiling Arrays and NGS experiments.
|Author||Oscar Flores, Ricard Illa|
|Date of publication||None|
|Maintainer||Ricard Illa <firstname.lastname@example.org>|
|License||LGPL (>= 3)|
controlCorrection: Correct experimental profiles with control sample
coverage.rpm: Coverage calculation and normalization to reads per million...
export.bed: Export ranges in BED format
export.wig: Export values in WIG format
filterFFT: Clean noise and smoothing for genomic data using...
fragmentLenDetect: Fragments length detection from single-end sequencing samples
mergeCalls: Automatic merging of overlapped nucleosome calls
nucleosome_htseq: Example reads from high-troughtput sequencing nucleosome...
nucleosome_tiling: Example intensities from Tiling Microarray nucleosome...
nucleR-package: Nucleosome positioning package for R
pcKeepCompDetect: Auto detection of a fitted 'pcKeepComp' param for filterFFT...
peakDetection: Detect peaks (local maximum) from values series
peakScoring: Peak scoring function
plotPeaks: Nucleosome calling plot function
processReads: Process reads from High-Troughtput Sequencing experiments
processTilingArray: Obtain and clean nucleosome positioning data from tiling...
syntheticNucMap: Generates a synthetic nucleosome map