readBAM: Import reads from a list of BAM files.

Description Usage Arguments Value Author(s) Examples

Description

This function allows to load reads from BAM files from both single and paired-end commming from Next Generation Sequencing nucleosome mapping experiments.

Usage

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readBAM(files, type = "paired")

Arguments

files

List of input BAM files.

type

Describes the type of reads. Values allowed are single for single-ended reads and paired for pair-ended.

Value

GenomicRanges::GRangesList containing the reads of each input BAM file.

Author(s)

Ricard Illa ricard.illa@irbbarcelona.org

Examples

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infile <- system.file(
    "extdata", "cellCycleM_chrII_5000-25000.bam", package="nucleR"
)
reads <- readBAM(infile, type="paired")

nucleR documentation built on Nov. 8, 2020, 8:24 p.m.