API for nucleR
Nucleosome positioning package for R

Global functions
.export.bed Man page
bamFlagMatrix Source code
buildGRSingle Source code
buildReadsPaired Source code
check.mc Source code
checkConsistency Source code
controlCorrection Man page
controlCorrection,Rle-method Man page
controlCorrection,SimpleRleList-method Man page
controlCorrection,list-method Man page
controlCorrection,numeric-method Man page
coverAround Source code
coverAroundDF Source code
coverAroundIR Source code
coverAroundSC1 Source code
coverAround_1cor Source code
coverage.rpm Man page Source code
doPlot Source code
export.bed Man page Source code
export.bed,CompressedIRangesList-method Man page
export.bed,GRanges-method Man page
export.bed,IRanges-method Man page
export.bed,RangedData-method Man page
export.wig Man page Source code
filterFFT Man page Source code
filterFFT,Rle-method Man page
filterFFT,SimpleRleList-method Man page
filterFFT,list-method Man page
filterFFT,numeric-method Man page
filterNAs Source code
fragmentLenDetect Man page
fragmentLenDetect,AlignedRead-method Man page
fragmentLenDetect,RangedData-method Man page
getPos Source code
mergeCalls Man page Source code
mergeSpace Source code
mid Source code
nt2base Source code
nucleR Man page
nucleR-package Man page
nucleosomePatterns Source code
nucleosomePatternsDF Source code
nucleosome_htseq Man page
nucleosome_tiling Man page
pcKeepCompDetect Man page Source code
peakDetection Man page
peakDetection,list-method Man page
peakDetection,numeric-method Man page
peakScoring Man page
peakScoring,IRanges-method Man page
peakScoring,IRangesList-method Man page
peakScoring,list-method Man page
peakScoring,numeric-method Man page
plotCoverIndiv Source code
plotCoverOverlap Source code
plotPatterns Source code
plotPeaks Man page
plotPeaks,IRanges-method Man page
plotPeaks,RangedData-method Man page
plotPeaks,data.frame-method Man page
plotPeaks,numeric-method Man page
processPairedEnd Source code
processReads Man page
processReads,AlignedRead-method Man page
processReads,RangedData-method Man page
processSingleEnd Source code
processStrand Source code
processTilingArray Man page Source code
readAlignedBatch Source code
readBAM Man page Source code
readBamFile Source code
readSingleFile Source code
removeRepeated Source code
sampleData Source code
syntheticNucMap Man page Source code
xlapply Source code
nucleR documentation built on Nov. 17, 2017, 9:59 a.m.