nucleosome_htseq: Example reads from high-troughtput sequencing nucleosome...

Description Format Details Source

Description

Few reads from paired-ended MNase-seq experiment in S.cerevisiae where mononucleosomes were sequenced

Format

GRanges with the range of the reads and a data column with the strand information.

Details

This data is obtained from MNase digested nucleosomal DNA and sequenced with Illumina platform. Paired-ended reads where mapped to SacCer1 genome using Bowtie, and imported to R using the package ShortRead and paired ends where merged into a single range.

Reads were sorted by chromosome and starting position and only a few reads from the starting positions of chromosome 1 are presented.

Source

Publication pending


nucleR documentation built on Nov. 1, 2018, 2:23 a.m.