PapenfussLab/RTDetect: Retrotransposed transcript detection from structural variants
svaRetro contains functions for detecting retrotransposed transcripts (RTs) from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies RTs by exon-exon junctions and insertion sites. The candidate RTs are reported by events and annotated with information of the inserted transcripts.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Annotation Coverage DataImport Genetics Sequencing VariantAnnotation VariantDetection |
| Maintainer | |
| License | GPL-3 + file LICENSE |
| Version | 1.3.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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