whweve/IntAssoPlot: visualize genome-wide association study with gene annotation and linkage disequiblism
IntAssoPlot, an R package, provides improved visual display of GWAS results in a publication-ready format. The main panel of a IntAssoPlot plot contains connecting line link the relative association p-values on the -log10 scale, the genome annotation, and the linkage disequiblism (LD) matrix. Inspection of the output image can provide important biological information including locis that passed the genome-wide significant threshold, genes harbored or located near the significant loci, and the extent of LD within the selected region.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Genetics SNP Visualization |
| Maintainer | |
| License | GPL-3 | file LICENSE |
| Version | 0.99.21 |
| URL | https://github.com/whweve/IntAssoPlot |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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