nucleoSim: Generate synthetic nucleosome maps

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform.

AuthorRawane Samb [aut], Astrid DeschĂȘnes [cre, aut], Pascal Belleau [aut], Arnaud Droit [aut]
Date of publicationNone
MaintainerAstrid Deschenes <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca>
LicenseArtistic-2.0
Version1.2.0
https://github.com/arnauddroitlab/nucleoSim

View on Bioconductor

Files

nucleoSim/DESCRIPTION
nucleoSim/NAMESPACE
nucleoSim/NEWS
nucleoSim/R
nucleoSim/R/nucleoSim.R nucleoSim/R/nucleoSimFunctions.R nucleoSim/R/nucleoSimInternFunctions.R
nucleoSim/README.md
nucleoSim/build
nucleoSim/build/vignette.rds
nucleoSim/inst
nucleoSim/inst/doc
nucleoSim/inst/doc/nucleoSim.R
nucleoSim/inst/doc/nucleoSim.Rmd
nucleoSim/inst/doc/nucleoSim.html
nucleoSim/inst/unitTests
nucleoSim/inst/unitTests/Makefile.R
nucleoSim/inst/unitTests/test_syntheticNucMapFromDist.R
nucleoSim/inst/unitTests/test_syntheticNucReadsFromMap.R
nucleoSim/inst/unitTests/test_syntheticSampleFromDist.R
nucleoSim/man
nucleoSim/man/createNucReadsFromNucMap.Rd nucleoSim/man/nucleoSim-package.Rd nucleoSim/man/plot.syntheticNucMap.Rd nucleoSim/man/plot.syntheticNucReads.Rd nucleoSim/man/syntheticNucMapFromDist.Rd nucleoSim/man/syntheticNucMapFromDistValidation.Rd nucleoSim/man/syntheticNucReadsFromDist.Rd nucleoSim/man/syntheticNucReadsFromMap.Rd nucleoSim/man/syntheticNucReadsValidation.Rd
nucleoSim/tests
nucleoSim/tests/runTests.R
nucleoSim/vignettes
nucleoSim/vignettes/nucleoSim.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.