Identification of aberrant gene expression in RNA-seq data. Read count expectations are modeled by an autoencoder to control for confounders in the data. Given these expectations, the RNA-seq read counts are assumed to follow a negative binomial distribution with a gene-specific dispersion. Outliers are then identified as read counts that significantly deviate from this distribution. Furthermore, OUTRIDER provides useful plotting functions to analyze and visualize the results.
|Author||Felix Brechtmann [aut], Christian Mertes [aut, cre], Agne Matuseviciute [aut], Michaela Fee Müller [ctb], Vicente Yepez [aut], Julien Gagneur [aut]|
|Bioconductor views||Alignment GeneExpression Genetics ImmunoOncology RNASeq Sequencing Transcriptomics|
|Maintainer||Christian Mertes <email@example.com>|
|License||MIT + file LICENSE|
|Package repository||View on Bioconductor|
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