fit: Fit the negative binomial distribution
In OUTRIDER: OUTRIDER - OUTlier in RNA-Seq fInDER
Description
Usage
Arguments
Value
Examples
Description
Fit a negative binomial (NB) distribution to the counts per gene
over all samples using, if available, the precomputed control factors.
If no normalization factors are provided only the sizeFactors are used.
Usage
1
2
Arguments
object
An OutriderDataSet
BPPARAM
by default bpparam()
...
Currently not used.
Value
An OutriderDataSet object with the fitted model. Accessible through:
mcols(ods)[,c('mu', 'theta')].
Examples
1
2
3
4
5
ods <- makeExampleOutriderDataSet()
ods <- estimateSizeFactors(ods)
ods <- fit(ods)
mcols(ods)[1:10,c('mu', 'theta')]
OUTRIDER documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Arguments Value Examples
Description
Fit a negative binomial (NB) distribution to the counts per gene over all samples using, if available, the precomputed control factors. If no normalization factors are provided only the sizeFactors are used.
Usage
1 2 |
Arguments
object |
An OutriderDataSet |
BPPARAM |
by default bpparam() |
... |
Currently not used. |
Value
An OutriderDataSet object with the fitted model. Accessible through:
mcols(ods)[,c('mu', 'theta')].
Examples
1 2 3 4 5 | ods <- makeExampleOutriderDataSet()
ods <- estimateSizeFactors(ods)
ods <- fit(ods)
mcols(ods)[1:10,c('mu', 'theta')]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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