computeLatentSpace: Extracting the latent space
In OUTRIDER: OUTRIDER - OUTlier in RNA-Seq fInDER
Description
Usage
Arguments
Value
Examples
View source: R/controlForConfounders.R
Description
Extracts the latent space from the OutriderDataSet object
determined by the autoencoder.
Usage
1
computeLatentSpace(ods)
Arguments
ods
An OutriderDataSet
Value
A matrix containing the latent space determined by the autoencoder.
Examples
1
2
3
4
5
ods <- makeExampleOutriderDataSet()
ods <- estimateSizeFactors(ods)
ods <- controlForConfounders(ods, implementation="pca")
computeLatentSpace(ods)[,1:6]
OUTRIDER documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Arguments Value Examples
View source: R/controlForConfounders.R
Description
Extracts the latent space from the OutriderDataSet object determined by the autoencoder.
Usage
1 | computeLatentSpace(ods)
|
Arguments
ods |
An OutriderDataSet |
Value
A matrix containing the latent space determined by the autoencoder.
Examples
1 2 3 4 5 | ods <- makeExampleOutriderDataSet()
ods <- estimateSizeFactors(ods)
ods <- controlForConfounders(ods, implementation="pca")
computeLatentSpace(ods)[,1:6]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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