fpkm: Calculate FPM and FPKM values

In OUTRIDER: OUTRIDER - OUTlier in RNA-Seq fInDER

Description

This is the fpm and fpkm function from DESeq2. For more details see: fpkm and fpm

See Also

fpkm fpm

Examples

ods <- makeExampleOutriderDataSet()
mcols(ods)['basepairs'] <- round(rnorm(nrow(ods), 1000, 500))

mcols(ods)['basepairs']
fpkm(ods)[1:10,1:10]
fpm(ods)[1:10,1:10]

OUTRIDER documentation built on Nov. 8, 2020, 5:16 p.m.