Compartmap performs direct inference of higherorder chromatin from scRNAseq, scATACseq, and methylation arrays. This package implements a JamesStein estimator for computing singlecell level higherorder chromatin domains. Further, we utilize random matrix theory as a method to denoise correlation matrices to achieve a similar "plaidlike" patterning as observed in HiC and scHiC data.
Package details 


Bioconductor views  ATACSeq Epigenetics Genetics RNASeq SingleCell 
Maintainer  
License  GPL3 + file LICENSE 
Version  1.13.05 
URL  https://github.com/biobenkj/compartmap 
Package repository  View on GitHub 
Installation 
Install the latest version of this package by entering the following in R:

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