fixCompartments: Invert, or "fix", compartments that have a minimum confidence...
In biobenkj/compartmentalizer: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq
View source: R/fixCompartments.R
fixCompartments R Documentation
Invert, or "fix", compartments that have a minimum confidence score (1-min.conf)
Description
Invert, or "fix", compartments that have a minimum confidence score (1-min.conf)
Usage
fixCompartments(obj, min.conf = 0.8, parallel = FALSE, cores = 1)
Arguments
obj
Input RaggedExperiment or output of condenseSE
min.conf
Minimum confidence score to use
parallel
Whether to run in parallel
cores
How many cores to use if running in parallel
Value
A "fixed" set of compartments
biobenkj/compartmentalizer documentation built on Oct. 13, 2023, 5:26 p.m.
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View source: R/fixCompartments.R
| fixCompartments | R Documentation |
Invert, or "fix", compartments that have a minimum confidence score (1-min.conf)
Description
Invert, or "fix", compartments that have a minimum confidence score (1-min.conf)
Usage
fixCompartments(obj, min.conf = 0.8, parallel = FALSE, cores = 1)
Arguments
obj |
Input RaggedExperiment or output of condenseSE |
min.conf |
Minimum confidence score to use |
parallel |
Whether to run in parallel |
cores |
How many cores to use if running in parallel |
Value
A "fixed" set of compartments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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