getGlobalMeans: Get the global means of a matrix

In biobenkj/compartmentalizer: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq

Get the global means of a matrix

Description

Get the global means of a matrix

Usage

getGlobalMeans(obj, targets = NULL, assay = c("atac", "rna", "array"))

Arguments

obj	Input SummarizedExperiment object
targets	Column names or indices to indicate which samples to shrink towards
assay	What type of assay the data are from

Value

A vector of global or targeted means

Examples

data("k562_scrna_chr14", package = "compartmap")
scrna.global.means <- getGlobalMeans(k562_scrna_chr14, assay = "rna")

biobenkj/compartmentalizer documentation built on Oct. 13, 2023, 5:26 p.m.